Ligation is the process of joining two DNA fragments or other molecules by a phosphate ester linkage with the action of enzyme. Ligation of DNA is process that involve the DNA of interest is inserted into the plasmid. This 3’-hydroxyl of DNA terminus are joined together with 5’-phosphoryl of another by phosphodiester bond. The ligation of DNA fragments usually performed by using T4 DNA ligase. All the reaction components such as ligation buffer, DNA insert, pGEM®-T, and T4 DNA ligase is mixed by gentle pipetting. The 2X rapid ligation buffer is used in this experiment to saving the ligation time. This ligation buffer contains ATP. ATP is used to catalyze the formation of phosphodiester bond and the reaction of restriction enzyme buffer. The recommended time and temperature of incubation when using 2X rapid ligation buffer are one hour at room temperature (24°C) and overnight at 4°C. In this overnight incubation at 4°C is applied to achieve maximum number of recombinants.…
Learning Goals: Insert your uncut unknown plasmid into chemically competent DH-5 E.coli cells and use antibiotic resistance to confirm the success of the transformation. You should familiarize yourself with the various methods of transformation and the advantages/disadvantages of each type. You should also understand how heat shock transformation works and how chemically competent cells make this type of transformation possible. For this transformation antibiotic markers associated with foreign pieces of DNA will be used to help verify that the DNA of interest was successfully inserted into the vector.…
Genetic transformation is one of the most important processes in biotechnology. Essentially, genetic transformation involves the process where a cell (in this lab, a bacterial cell) takes up foreign DNA from its surroundings and incorporates it into its own DNA. This gene transfer is accomplished with the aid of a plasmid, a…
7) In gene cloning, the bacterial cells take up the recombinant plasmid DNA through a process called transformation. Bacterial cells can be transformed using electric pulsation or heat. The short electric pulse or a brief rise in temperature causes openings in the plasma membrane. The bacterial cells make copies of the recombinant plasmid DNA during cell…
When a bacterium integrates a piece of DNA into its genome, bacterial transformation has occurred. In this experiment bacterial transformation will be done using calcium chloride/heat shock. This is done by incorporating the plasmids into chemically competent cells that were made permeable by the calcium chloride solution and heat shock. In 1928, Frederick Griffith, a physician from London, was he first person to experiment with bacterial transformation. He permanently transformed a safe, nonpathogenic bacterial strain of pneumococcus into a deadly pathogenic strain. [1]…
Genetic transformation is a process that primarily is inserting new DNA into an organism to change that organism’s trait. This process has many useful benefits when used correctly in different organisms. In this lab, bacteria was transformed by inserting DNA for Green Fluorescent Proteins. The DNA for these proteins were taken from bioluminescent jellyfish Aequorea victoria. One of the main lessons of the lab is learning of the use of ‘plasmids’. Plasmids are small pieces of DNA that usually code for one trait and are easily transferable between bacteria. This transfer of plasmids between bacteria is actually extremely helpful for them and are key in their survival. The plasmid that codes for the Green Fluorescent Proteins is accompanied with a gene for resistance to the antibiotic ampicillin. To ‘switch on’ the gene for fluorescence caused by the proteins, sugar arabinose must be added to the bacteria’s environment. If there is no sugar arabinose introduced to the plates, then the bacteria will appear white and will not glow, even if the gene for the proteins is successfully inserted. If the gene was successfully inserted and there is sugar arabinose present then the bacteria will glow a fluorescent green. The objectives for this lab is was to see the effects on bacteria in four different cases. The first case is the effect on bacteria when the gene for pGLO is introduced with LB (a ‘broth’ like substance that bacteria feed off of) and ampacillin. The second case is the effect on bacteria when the gene for pGLO is introduced with LB, ampacillin, and sugar arabinose. The third case is the effect on bacteria when no gene for pGLO is introduced, but LB and ampacillin is still introduced, The fourth case is the effect on bacteria when no gene for pGLO is introduced, but bacteria is still placed in a LB enriched environment. The…
4. Cut plasmid and eukaryotic DNA with the same restriction enzyme… Mix fragments and allow them to match… Ligate… Transform into bacteria… Identify desired clone.…
Then we opened the tubes and using a sterile pipet we put 250 µl of transfer solution in and placed them on ice. Next we removed them from the ice and used a sterile loop to pick up a single colony of bacteria. We put a colony in both tubes and then placed both tubes back on the ice. After that, we placed a loopful of plasmid DNA into the positive pGLO. We then incubated the tubes on ice for ten minutes. After the ten minutes were up, we placed the tubes in a bath of forty two degree centigrade water for fifty seconds, and then quickly back onto the ice for two minutes. After that we removed them from the ice and added 250 µl of LB nutrient broth to the tubes and let them sit at room temperature for ten minutes. When the ten minutes had passed, we flicked the tubes to mix them and added 100 µl of transformation and control suspensions onto the appropriate plates. Finally we spread the solution using a sterile loop, stacked the plates, and placed them upside down in an incubator at thirty seven degrees…
Transformation is one of three processes for horizontal gene transfer by which genetic material passes from bacterium to another. “It is the acting of altering a genetic cell resulting from putting together exogenous genetic material from its surroundings through the cell membrane(s),”(Wikipedia, 2017, p.1).…
If the pGLO plasmid is inserted into competent Escherichia coli cells, then the transformed bacteria will be resistant to ampicillin and will glow green under UV light. If samples of DNA are cut using certain restriction enxymes and separated using gel electrophoresis, then the smaller the DNA fragment cut, the greater the distance it will travel in the gel.…
4. E.coli DH5α competent cells were prepared for us so that transformation of the recombinant plasmids and the competent cells through heat shock transformation.…
In the first part of this lab, E.coli cells were transformed with an R-plasmid carrying a tetracycline resistant gene, giving rise to tetracycline resistant E.coli strain. This was accomplished through transformation, which allowed E.coli to directly uptake the naked DNA molecule carrying the antibiotic resistant gene (1). However, in order to take up the DNA and incorporate them into their genome via recombination, cells must be competent (1). Therefore, E.coli cells which are not competent under normal conditions were treated with cold and high concentration of CaCl2, in order to make them artificially competent (1). The transformants were grown on the LB with the tetracycline antibiotic, and on the LB without the tetracycline. Then the viable competent cells and the viable cells were counted to calculate the frequency of transformation.…
One aspect of the DNA cloning experiments that is carefully considered is the selection of cloning vectors. A variety of vectors have been created, each being suitable for a particular use. One common vector used in laboratories is a plasmid called pUC19. It is 2686 base pairs long and possesses an origin of replication which allows the production of over 100 copies in a competent E.coli cell. It possesses a multiple cloning site (MCS) which is artificially implanted by adding a polylinker sequence to it. The pUC19 plasmid is also altered by inserting a gene that codes for beta-lactamase which confers resistance to the antibiotic ampicillin (Read and Strachan 2011). The MCS occupies the 5’ end of the gene lacZ (Sherwood, Willey and Woolverton 2012). This gene codes for only the alpha-peptide of beta-galactosidase, an enzyme used to break down the disaccharide lactose into glucose and galactose (Read and Strachan 2011). The aim of this experiment is to incorporate a cDNA called CIH-1, from plasmid pBK-CMV, into pUC19.…
The following experiment method is based on the procedure given through the Biology Department at UWM (Wimpee, 2006). This experiments started with two tubes of 100 uL E. coli cells, labeled one and two. Tube one just contained normal E. coli cells. Tube two was the tube with the plasmid added to it. The first step in this experiment was to add plasmid DNA, the “mini chromosomes” of the bacteria, to the E. coli cells in order to change the genetic makeup of them. I then added 10 uL of the plasmid to tube two. The next step was to chill both the tubes E.…
We predicted that the cells transformed without stuffer would have higher ligation efficiency than the cells transformed with stuffer. The reason for this is because the stuffer (if not removed) would cause the plasmid to ligate back into itself…