Ligation is the process of joining two DNA fragments or other molecules by a phosphate ester linkage with the action of enzyme. Ligation of DNA is process that involve the DNA of interest is inserted into the plasmid. This 3’-hydroxyl of DNA terminus are joined together with 5’-phosphoryl of another by phosphodiester bond. The ligation of DNA fragments usually performed by using T4 DNA ligase. All the reaction components such as ligation buffer, DNA insert, pGEM®-T, and T4 DNA ligase is mixed by gentle pipetting. The 2X rapid ligation buffer is used in this experiment to saving the ligation time. This ligation buffer contains ATP. ATP is used to catalyze the formation of phosphodiester bond and the reaction of restriction enzyme buffer. The recommended time and temperature of incubation when using 2X rapid ligation buffer are one hour at room temperature (24°C) and overnight at 4°C. In this overnight incubation at 4°C is applied to achieve maximum number of recombinants.…
Introduction: The biological membranes are composed of phospholipid bilayers, each phospholipid with hydrophilic heads and hydrophobic tails, and proteins. This arrangement of the proteins and lipids produces a selectively permeable membrane. Many kinds of molecules surround or are contained within cells, but water is perhaps the single most important molecule in any living system (Hayden and McNeil 2012). Since water molecules are so small, they are constantly going into and out of the cell. Osmosis is a situation where more water molecules are moving across the membrane in one direction than the other (Hayden and McNeil 2012). During osmosis the net movement of water molecules will be from a solution that has a lower osmotic concentration to a solution that has a higher osmotic concentration. When a solution has a higher concentration of solute within the cell than out, it is called hypertonic. When a solution has a lower concentration of solute within the cell than out, it is called hypotonic. And when there are equal concentrations inside and out of the cell, it is called isotonic. The relative osmotic concentration can be determined by a change in mass of the tissue.…
E) cut the plasmid with enzyme X and then insert the gene into the plasmid.…
At intervals of 20, 40, and 60 minutes, the tubes are removed. Record the volume of gas produced in each fermentation tube. Each tube is graduated in tenths of a milliliter. (HINT: Look at the amount of gas, not the level of the liquid.)…
During this experiment we compared the hemagglutination reaction of control Con A solution at 2 mg/ml in Con A buffer with the hemagglutination reaction of your own purified Con A sample that you diluted previously at 2 mg/ml in Con A buffer. The purpose of this lab was to determine the strength of the reaction by performing serial dilutions on both the Con A sample and the control Con A sample, and determine through observations whether or not addition of galactose or mannose will inhibit this reaction. I hypothesize that the Con A + galactose solutions will have partial agglutination and partial no agglutination, and the Con A + mannose solutions will have all no agglutination.…
The Endocrine systems mechanism of communication is sending messages from the cells of the endocrine and nervous system to the cells in other systems by releasing hormones. The Endocrine systems control feature is part of negative feedback because it regulates body functions in order to maintain homeostasis. The communication and control function of the Endocrine System are key parts in order for the body to maintain homeostasis. The Endocrine and Nervous system unify to make the body work as a unit because they communicate and control.…
My hypothesis is if the water temperature is hot then the life saver will dissolve quicker because the hot water has a greater chemical effect on the life saver than the other temperatures. I believe this is because the hot water is creating a chemical change and is changing the solid object into a liquid.…
In the second part of the lab, lateral gene transfer by generalized transduction was done on E.coli cells. In the process of transduction, the transfer of genes is facilitated by bacteriophage, which is a virus that infects a bacterial host (1). Generalized transduction involves lytic infections that kill the bacterial cells, and during the process, bacterial DNA is packaged into a new phage head which in turn injects the DNA into another bacterium (1). In this lab, P1vir phage was used and grown on the donor strain by making a phage lysate. P1vir phage kills bacterial cells by lytic infections, which is required in the generalized transduction (1). On the other hand, the wild-type p1 is a lysogenic phage and therefore could not be used for the generalized transduction (1). In order to prevent excessive killing of the recipient E.coli strain, the P1vir lysate was tittered by serial dilutions. This would also prevent infection and lysis of the transducing particle. In generalized transduction, trp-pyrF region of CSH61 chromosome, which was the P1vir lysate, was laterally transferred to the recipient CSH54 strain. The genotypes of…
One aspect of the DNA cloning experiments that is carefully considered is the selection of cloning vectors. A variety of vectors have been created, each being suitable for a particular use. One common vector used in laboratories is a plasmid called pUC19. It is 2686 base pairs long and possesses an origin of replication which allows the production of over 100 copies in a competent E.coli cell. It possesses a multiple cloning site (MCS) which is artificially implanted by adding a polylinker sequence to it. The pUC19 plasmid is also altered by inserting a gene that codes for beta-lactamase which confers resistance to the antibiotic ampicillin (Read and Strachan 2011). The MCS occupies the 5’ end of the gene lacZ (Sherwood, Willey and Woolverton 2012). This gene codes for only the alpha-peptide of beta-galactosidase, an enzyme used to break down the disaccharide lactose into glucose and galactose (Read and Strachan 2011). The aim of this experiment is to incorporate a cDNA called CIH-1, from plasmid pBK-CMV, into pUC19.…
The following experiment method is based on the procedure given through the Biology Department at UWM (Wimpee, 2006). This experiments started with two tubes of 100 uL E. coli cells, labeled one and two. Tube one just contained normal E. coli cells. Tube two was the tube with the plasmid added to it. The first step in this experiment was to add plasmid DNA, the “mini chromosomes” of the bacteria, to the E. coli cells in order to change the genetic makeup of them. I then added 10 uL of the plasmid to tube two. The next step was to chill both the tubes E.…
The object of this experiment is to determine how changing the size of the beak of a finch will affect the population as well as the growth rate of the finch’s beak. The reason for the experiment is to evaluate evolution and how it affects the finch’s population, and how natural selection is always present in life. In this experiment I will show that the finch will continue to evolve until its beak has reached the optimal size for sustaining life, when changing the beak size to a much larger size we will see that the finch will have no need for further evolution of its beak and that its population will become much more stable and consistent throughout the years.…
Like other aquatic animals, goldfish have a one-way flow respiratory system. This means that their respiratory system pumps water through their gills and back into the water supply to absorb oxygen. Gills--which are the organs that most aquatic animals use to breathe--consist of complex filters that extract oxygen from the water.”…
Also for the control group, the turbidity level was measured to be 3.23NTU and the Q-value for the control was 89. Whereas the experimental group had a turbidity level of 5.63NTU and a Q-value of 84. This resulted in a difference in turbidity that was 2.40NTU and a difference in Q-value that was 5. By raising the E. coli levels, we successfully raised turbidity and lowered the Q-value (Figure 3). The only test we conducted that was not statistically significant was our CFU assay.…
Then 0.4mL of E. Coli was then plated each agar plates. Then we put the different disks to their respective quarters. The plates then were placed into the incubator overnight at 37 degrees C. After 24 hours the zone of inhibition were measured (mm) for each of soaps. 4)…
➢ Independent Variables – amount of water ( we estimated that the amount of water 5m from the ocean will be greater than that 20m away from the ocean ).…