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Microbial Ecology of Autothermal Thermophilic Aerobic Digesters

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Microbial Ecology of Autothermal Thermophilic Aerobic Digesters
Systematic and Applied Microbiology 34 (2011) 127–138

Contents lists available at ScienceDirect

Systematic and Applied Microbiology journal homepage: www.elsevier.de/syapm

Microbial ecology of autothermal thermophilic aerobic digester
(ATAD) systems for treating waste activated sludge
David Hayes, Leonard Izzard 1 , Robert Seviour ∗
Biotechnology Research Centre, La Trobe University, Bendigo, VIC 3552, Australia

a r t i c l e

i n f o

Article history:
Received 3 June 2010
Keywords:
Waste activated sludge
ATAD
Thermus thermophilus
FISH/MAR
DGGE

a b s t r a c t
Despite their widespread use, our understanding of the microbial ecology of the autothermal thermophilic aerobic digesters (ATAD) used to dispose of sludge from wastewater treatment plants is poor. Applying both culture-dependent and molecular methods to two ATAD systems in Victoria, Australia treating different wastewaters revealed that their communities were highly specialized. Denaturing gradient gel electrophoresis (DGGE) profiling suggested differences in their population compositions and both changed over time. However, both showed low level biodiversity, and contained several novel bacterial populations. 16S rRNA clone library data and FISH analyses showed that Thermus thermophilus dominated both communities and that of a third ATAD plant in NSW (more than 90% of the total bacterial biovolume in repeated samples taken from each of the three ATAD plants). Culture-dependent methods also showed
Geobacillus spp. were present in both Victorian communities. Nevertheless, the ecophysiology of these populations and their putative roles in sludge digestion remain unclear. FISH/microautoradiographic studies did not provide conclusive data elucidating which substrate/s T. thermophilus might utilize in the
ATAD reactors.
Crown Copyright © 2011 Published by Elsevier GmbH. All rights reserved.

Introduction
Most activated sludge plants generate large volumes of secondary



References: [1] Agarwal, S., Mohammed, A., Novak, J.T. (2005) Sequential polymer dosing for effective dewatering of ATAD sludges [2] Altschul, S.F., Gish, W., Miller, W., Myers, E.W., Lipman, D.J. (1990) Basic local alignment search tool (1990) Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations 56, 1919–1925. [4] Amann, R.I. (1995) In situ identification of micro-organisms by whole cell hybridization with rRNA-targeted nucleic acid probes [5] Arthurson, V. (2008) Proper sanitization of sewage sludge: a critical issue for a sustainable society [6] Ashelford, K.E., Chuzhanova, N.A., Fry, J.C., Jones, A.J., Weightman, A.J. (2005) At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies [7] Ashelford, K.E., Chuzhanova, N.A., Fry, J.C., Jones, A.J., Weightman, A.J. (2006) New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl. Environ. Microbiol. 72, 5734–5741. (1996) Isolation of Thermus strains from hot composts (60 to 80 ◦ C). Appl. Environ. Microbiol. 62, 1723–1727. [9] Blanc, M., Marilley, L., Beffa, T., Aragno, M. (1997) Rapid identification of heterotrophic spore-forming bacteria isolated from hot composts. Int. J. Syst. Bacteriol. 47, 1246–1248. [10] Bode, H., Gruenebaum, T. (2000) Cost of municipal sewage treatment- structure, origin, minimization-methods of fair cost comparison and allocation. [11] Bowker, R., Trueblood, R. (2002) Control of ATAD odors at the Eagle River Water and Sanitation District [12] Byers, H.K., Patel, B.K.C., Stackerbrandt, E. (1997) Design and application of four oligonucleotide probes specific for Thermus species [13] Carr, E., Eales, K., Soddell, J., Seviour, R.J. (2005) Improved permeabilization protocols for fluorescence in situ hybridization (FISH) of mycolic-acid-containing bacteria found in foams analysis of microbial succession during composting of swine slurry and mushroom cultural waste. J. Microbiol. Biotechnol. 18, 1874–1883. [15] Csikor, Z., Mihaltz, P., Hanifa, A., Kovacs, R., Dahab, M.F. (2002) Identification of factors contributing to degradation in autothermal thermophilic sludge digestion [16] da Costa, M.S., Nobre, M.F., Rainey, F.A. (2001) Genus I. Thermus Brock and Freeze 1969, in: Boone, D.R., Castenholz, R.W., Garrity, G.M [17] Dahllöf, I. (2002) Molecular community analysis of microbial diversity. Curr. [18] Daims, H., Brühl, A., Amann, R.I., Schleifer, K.H., Wagner, M. (1999) The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: [19] Dees, P.M., Ghiorse, W.C. (2001) Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and [20] Dice, L.R. (1945) Measures of the amount of ecologic association between species [21] Felsenstein, J. (1981) Evolutionary trees from gene frequencies and quantitative characters: finding maximum likelihood estimates D. Hayes et al. / Systematic and Applied Microbiology 34 (2011) 127–138 [22] Felsenstein, J [23] Felske, A., Osborn, A.M. (2005) DNA fingerprinting of microbial communities. Report 3815-15, (2003) London, UK. [25] Fuchs, B.M., Glöckner, F.O., Wulf, J., Amann, R. (2000) Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes [26] L. Fuchs, M. Fuchs, Process for aerobic-thermophilic stabilization and disinfection of sludge (1980) U.S. Patent 7,531,093, 2009. [27] Fytili, D., Zabaniotou, A. (2008) Utilization of sewage sludge in EU application of old and new methods: a review [28] Guo, Y., Zhu, N., Zhu, S., Deng, C. (2007) Molecular phylogenetic diversity of bacteria and its spatial distribution in composts. J. Appl. Microbiol. 103, 1344–1354. [29] Gyger, R.F., McWhirter, J.R., Balan, P. (2007) Continuous multi-stage autothermal aerobic digestion process. Proc. Water Environ. Fed.: Residuals Biosolids Manage [30] Harmsen, H.J.M., Prieur, D., Jeanthon, C. (1997) Group-specific 16S rRNAtargeted oligonucleotide probes to identify thermophilic bacteria in marine hydrothermal vents [32] Hensel, R., Demharter, W., Hilpert, R. (1989) The microflora involved in aerobic thermophilic sludge stabilization [33] Hepner, S., Striebig, B., Regan, R. (2002) Odour generation and control from the Autothermal Thermophilic Aerobic Digestion (ATAD) processL [35] Huber, T., Faulkner, G., Hugenholtz, P. (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments 20, 2317–2319. [36] Jukes, T.H., Cantor, C.R. (1969) Evolution of protein molecules. In: Munro, H.N. [37] Kambhu, K., Andrews, J.F. (1969) Aerobic Thermophilic Process for the Biological Treatment of Wastes: Simulation Studies. J. (Water Pollut. Control Fed.) 41 (5), Research Supplement to: 41(5) Part II.

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